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Mark Stoneking
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Publications
     
  Mark Stoneking
  updatde 07th May 2009  
     
 
  1. May, B., M. Stoneking, and J.E. Wright.  1979.  Joint segregation of malate dehydrogenase and diaphorase loci in brown trout (Salmo trutta).  Transactions of the American Fisheries Society  108: 373-377.
  2. May, B., J.E. Wright, and M. Stoneking.  1979.  Joint segregation of biochemical loci  in Salmonidae:  results from experiments with Salvelinus and review of the literature on other species.  Journal of the Fisheries Research Board of Canada  36: 1114-1128.
  3. Stoneking, M., B. May, and J.E. Wright.  1979.  Genetic variation, inheritance, and quaternary structure of malic enzyme in brook trout (Salvelinus fontinalis).  Biochemical Genetics 17: 599-619.
  4. May, B., M. Stoneking, and J.E. Wright.  1980.  Joint segregation of biochemical loci  in Salmonidae:  II. Linkage associations from a hybridized Salvelinus genome (S. namaycush  X  S. fontinalis).  Genetics  95: 707-726.
  5. Wright, J.E., B. May, M. Stoneking, and G.M. Lee.  1980.  Pseudolinkage of the duplicate loci for supernatant aspartate aminotransferase in brook trout, Salvelinus fontinalis.  Journal of Heredity  71: 223-228. 
  6. Stoneking, M., D.J. Wagner, and A.C. Hildebrand.  1981.  Genetic evidence suggesting subspecific differences between northern and southern populations of brook trout  (Salvelinus fontinalis). Copeia  1981: 810-819.
  7. Stoneking, M., B. May, and J.E. Wright.  1981.  Loss of duplicate gene expression in salmonids:  evidence for a null allele polymorphism at the duplicate aspartate aminotransferase loci in brook trout  (Salvelinus fontinalis).  Biochemical Genetics 19: 1063-1077.
  8. Wilson, A.C., R.L. Cann, S.M. Carr, M. George, U.B. Gyllensten, K. Helm-Bychowski, R.G. Higuchi, S.R. Palumbi, E.M. Prager, R.D. Sage, and M. Stoneking.  1985.  Mitochondrial DNA in relation to evolutionary genetics.  Biological Journal of the Linnaean Society  26: 375-400.
  9. Stoneking, M., K. Bhatia, and A.C. Wilson.  1986.  Mitochondrial DNA variation in Eastern Highlanders of Papua New Guinea.  In:  Genetic Variation and its Maintenance,  D.F. Roberts and G. DeStefano (eds.), Cambridge University Press, Cambridge, pp. 87-100.
  10. Stoneking, M., K. Bhatia, and A.C. Wilson.  1986.  Rate of sequence divergence estimated from restriction maps of mitochondrial DNAs from Papua New Guinea.  Cold Spring Harbor Symposia on Quantitative Biology  51: 433-439.
  11. Whittam, T.S., A.G. Clark, M. Stoneking, R.L. Cann, and A.C. Wilson.  1986.  Allelic variation  in human mitochondrial genes based on patterns of restriction site polymorphism.  Proceedings of the National Academy of Science USA  83: 9611-9615.
  12. Cann, R.L., M. Stoneking, and A.C. Wilson.  1987.  Mitochondrial DNA and human evolution.  Nature  325: 31-36.
  13. Cann, R.L., M. Stoneking, and A.C. Wilson.  1987.  Disputed African origin of human populations.  Nature  329: 111-112.
  14. Wrischnik, L.A., R.G. Higuchi, M. Stoneking, H.A. Erlich, N. Arnheim, and A.C. Wilson.  1987.  Length mutations in human mitochondrial DNA: direct sequencing of enzymatically amplified DNA.  Nucleic Acids Research  15: 529-542.
  15. Wilson, A.C., M. Stoneking, R.L. Cann, E.M. Prager, S.D. Ferris, L.A. Wrischnik, and R.G. Higuchi.  1987.  Mitochondrial clans and the age of our common mother.  In:  Human Genetics,  Proceedings of the Seventh International Congress, Berlin 1986,  F. Vogel and K. Sperling (eds.), Springer-Verlag, Berlin, pp. 158-164.
  16. Vigilant, L., M. Stoneking, and A.C. Wilson.  1988.  Conformational mutation in human mtDNA detected by direct sequencing of enzymatically amplified DNA.  Nucleic Acids Research  16: 5945-5955.  
  17. Stoneking, M. and R.L. Cann.  1989.  African origin of human mitochondrial DNA.  In:  The Human Revolution: Behavioural and Biological Perspectives on the Origins of Modern Humans,  P. Mellars  and C. Stringer (eds.), Edinburgh University Press, Edinburgh, pp. 17-30.
  18. Stoneking, M. and A.C. Wilson.  1989.  Mitochondrial DNA.  In:  The Colonization of the Pacific: A Genetic Trail,  A.V.S. Hill and S.W. Serjeantson (eds.), Oxford University Press, Oxford, pp. 215-245.
  19. Stoneking, M., L.B. Jorde, K. Bhatia, and A.C. Wilson.  1990.  Geographic variation in human mitochondrial DNA from Papua New Guinea. Genetics 124: 717-733.
  20. Helmuth, R., N. Fildes, E. Blake, M.C. Luce, J. Chimera, R. Madej, C. Gorodezky, M. Stoneking, N. Schmill, W. Klitz, R. Higuchi, and H. A. Erlich.  1990.  HLA-DQ allele and genotype frequencies in various human populations, determined by using enzymatic amplification and oligonucleotide probes.  American Journal of Human Genetics  47: 515-523.
  21. Stoneking, M.  1990.  Departure of human mtDNA variation from neutral expectations: an alternative explanation.  Journal of Molecular Evolution  31: 343-346.
  22. Stoneking, M., D. Hedgecock, R. G. Higuchi, L. Vigilant, and H. A. Erlich.  1991. Population variation of human mitochondrial DNA control region sequences detected by enzymatic amplification and sequence-specific oligonucleotide probes.  American Journal of Human Genetics  48: 370-382.
  23. Vigilant, L., M. Stoneking, H. Harpending, K. Hawkes, and A. C. Wilson.  1991.  African populations and the evolution of human mitochondrial DNA.  Science  253: 1503-1507.
  24. Wilson, A.C., M. Stoneking, and R. L. Cann.  1991.  Ancestral geographic states and the peril of parsimony.  Systematic Zoology  40: 363-365.
  25. Hedges, S. B., S. Kumar, K. Tamura, and M. Stoneking.  1992.  Human origins and analysis of mitochondrial DNA sequences.  Science 255: 737-739.
  26. Perna, N. T., M. A. Batzer, P. L. Deininger, and M. Stoneking.  1992.  Alu insertion polymorphism:  a new type of marker for human population studies.  Human Biology  64: 641-648.
  27. Stoneking, M., S. T. Sherry, A. J. Redd, and L. Vigilant.  1992.  New approaches to dating suggest a recent age for the human mtDNA ancestor.  Phil. Trans. R. Soc. Lond. B 337: 167-175.
  28. Moonsamy, P. V., V. C. Suraj, T. L. Bugawan, R. K. Saiki, M. Stoneking, J. Roudier, M. M. A. Magzoub, A. V. S. Hill, and A. B. Begovich.  1992.  Genetic diversity within the HLA Class II region:  ten new DPB1 alleles and their population distribution.  Tissue Antigens 40: 153-157.
  29. Stoneking, M., S. T. Sherry, and L. Vigilant.  1992.  Geographic origin of human mitochondrial DNA revisited.  Systematic Biology  41: 384-391.
  30. Buchanan, A. V., S. T. Sherry, K. M. Weiss, S. T. McGarvey, J. V. Neel, and M. Stoneking.  1993.   Extraction of DNA from frozen red blood cells.  Human Biology  65: 647-654.
  31. Harpending, H. C., S. T. Sherry, A. R. Rogers, and M. Stoneking.  1993.  The genetic structure of ancient human populations.  Current Anthropology  34: 483-496.
  32. Stoneking, M.  1993.  DNA and recent human evolution.  Evolutionary Anthropology 2: 60-73.
  33. Hutchin, T., I. Haworth, K. Higashi, N. Fischel-Ghodsian, M. Stoneking, N. Saha, K. Arnos, and G. Cortopassi.  1993.  A molecular basis for human hypersensitivity to aminoglycoside antibiotics.  Nucleic Acids Research  21: 4174-4179.
  34. Wilson, M. R., M. Stoneking, M. M. Holland, J. A. DiZinno, and B. Budowle.  1993.  Guidelines for the use of mitochondrial DNA sequencing in forensic science.  Crime Laboratory Digest  20: 68-77.
  35. Stone, A. C. and M. Stoneking.  1993.  Ancient DNA from a pre-Columbian Amerindian population.  American Journal of Physical Anthropology  92: 463-471.
  36. Batzer, M. A., M. Alegria-Hartman, H. Bazan, D. H. Kass, T. H. Shaikh, G. E. Novick, P. A. Ioannou, D. A. Boudreau, W. D. Scheer, R. J. Herrera, M. Stoneking, and P. L. Deininger.  1993.  Alu repeats as markers for human population genetics.  In:  Proceedings of the Fourth International Symposium on Human Identification, Promega Publishing, Madison, Wisconsin, pp. 49-57.
  37. Stoneking, M.  1994.  Mitochondrial DNA and human evolution.  Journal of Bioenergetics and Biomembranes  26: 241-249.
  38. Stoneking, M.  1994.  In defense of “Eve” - a response to Templeton's critique.  American Anthropologist  96: 131-141.
  39. Cheng, S., R. Higuchi, and M. Stoneking.  1994.  Complete mitochondrial genome amplification.  Nature Genetics 7: 350-351.
  40. Sherry, S. T., A. R. Rogers, H. Harpending, H. Soodyall, T. Jenkins, and M. Stoneking.  1994.  Mismatch distributions of mtDNA reveal recent human population expansions.  Human Biology  66: 761-775.
  41. Weiss, K. M., A. V. Buchanan, C. Daniel, and M. Stoneking.  1994.  Optimizing utilization of DNA from rare or archival anthropological samples.  Human Biology  66: 789-804.
  42. Batzer, M. A., M. Stoneking, M. Alegria-Hartman, H. Bazan, D. H. Kass, T. H. Shaikh, G. E. Novick, P. A. Ionnou, W. D. Scheer, R. J. Herrera, and P. L. Deininger.  1994.  African origin of human-specific polymorphic Alu insertions.  Proceedings of the National Academy of Sciences USA  91: 12288-12292.
  43. Connor, A. and M. Stoneking.  1994.  Assessing ethnicity from human mitochondrial DNA types determined by hybridization with sequence-specific oligonucleotides.  Journal of Forensic Sciences  39:1360-1371.
  44. Gill, P., C. Kimpton, R. Aliston-Greiner, K. Sullivan, M. Stoneking, T. Melton, J. Nott, S. Barritt, R. Roby, M. Holland, and V. Weedn.  1995.  Establishing the identity of Anna Anderson Manahan.  Nature Genetics 9:9-10.
  45. Redd, A. J., N. Takezaki, S. T. Sherry, S. T. McGarvey, A. S. M. Sofro, and M. Stoneking.  1995.  Evolutionary history of the COII/tRNAlys intergenic 9 b.p. deletion in human mitochondrial DNAs from the Pacific.  Molecular Biology and Evolution 12:604-615.
  46. Melton, T., R. Peterson, A. Redd, N. Saha, A. S. M. Sofro, J. Martinson, and M. Stoneking.  1995.  Polynesian genetic affinities with southeast Asian populations as identified by mtDNA analysis.  American Journal of Human Genetics 57:403-414.
  47. Soodyall, H., M. Stoneking, and T. Jenkins.  1995.  ‘Polynesian’ mtDNA in the Malagasy.  Nature Genetics 10:377-378.
  48. Stoneking, M.  1995.  Ancient DNA:  How do you know when you have it and what can you do with it?  American Journal of Human Genetics 57:1259-1262.
  49. Novick, G. E., C. C. Novick, J. Yunis, E. Yunis, K. Martinez, G. G. Duncan, G. M. Troup, P. L. Deininger, M. Stoneking, M. A. Batzer, and R. J. Herrera.  1995.  Polymorphic human specific Alu insertions as markers for human identification.  Electrophoresis 16:1596-1601.
  50. Stone, A. C., G. R. Milner, S. Pääbo, and M. Stoneking.  1996.  Sex determination of ancient human skeletons using DNA.  American Journal of Physical Anthropology 99:231-238.
  51. Bonnichsen, R., M. T. Beatty, M. D. Turner, and M. Stoneking.  1996.  What can be learned from hair?  A hair record from the Mammoth Meadow locus, southwestern Montana.  In:  Prehistoric Mongoloid Dispersals, T. Akazawa and E. J. E. Szathmary (eds.), Oxford University Press, Oxford, pp. 201-213.
  52. Batzer, M. A., S. S. Arcot, J. W. Phinney, M. Alegria-Hartman, D. H. Kass, S. M. Milligan, C. Kimpton, P. Gill, M. Hochmeister, P. A. Ioannou, R. J. Herrera, D. A. Boudreau, W. D. Scheer, B J. B. Keats, P. L. Deininger, and M. Stoneking.  1996.  Genetic variation of recent Alu insertions in human populations.  Journal of Molecular Evolution 42:22-29.
  53. Nachman, M. W., W. M. Brown, M. Stoneking, and C. F. Aquadro.  1996.  Non-neutral mitochondrial DNA variation in humans and chimpanzees.  Genetics 142:953-963.
  54. Soodyall, H., L. Vigilant, A. V. Hill, M. Stoneking, and T. Jenkins.  1996.  Mitochondrial DNA control region sequence variation suggests  multiple independent origins of an "Asian-specific" 9-bp deletion in sub-Saharan Africans.  American Journal of Human Genetics 58:595-608. 
  55. Knight, A., M. A. Batzer, M. Stoneking, H. K. Tiwari, W. D. Scheer, R. J. Herrera, and P. L. Deininger.  1996.  DNA sequences of Alu elements indicate a recent replacement of the human autosomal genetic complement.  Proceedings of the National Academy of Sciences USA 93:4360-4364.
  56. Bonatto, S. L., A. J. Redd, F. M. Salzano, and M. Stoneking.  1996.  Lack of ancient Polynesian-Amerindian contact.  American Journal of Human Genetics  59:253-255.
  57. Stoneking, M.  1996.  Mitochondrial DNA variation and human evolution.  In:  Human Genome Evolution, M. Jackson, T. Strachan, and G. Dover (eds.), BIOS Scientific Publishers, Oxford, pp. 263-281.
  58. Stoneking, M.  1996.  Mitochondrial DNA heteroplasmy:  out of the closet.  Biol. Chem. 377:603-604.
  59. Melton, T. and M. Stoneking.  1996.  Extent of heterogeneity in mitochondrial DNA of ethnic Asian populations.  Journal of Forensic Sciences 41:591-602.
  60. Soodyall, H., T. Jenkins, R. Hewitt, A. Krause, and M. Stoneking.  1996.  The peopling of Madagascar.  In:  Molecular Biology and Human Diversity, A. J. Boyce and C. G. N. Mascie-Taylor (eds.), Cambridge University Press, Cambridge, pp.156-170.
  61. Stone, A. C. and M. Stoneking.  1996.  Genetic analyses of an 8000 year-old native American skeleton.  Ancient Biomolecules 1:83-87.
  62. Thomas, R., H. Zischler, S. Pääbo, and M. Stoneking.  1996.  Novel mitochondrial DNA insertion polymorphism and its usefulness for human population studies.  Human Biology 68:847-854.
  63. Erlich, H. A., T. F. Bergström, M. Stoneking, and U. Gyllensten.  1996.  HLA sequence polymorphism and the origin of humans.  Science 274:1552-1554.
  64. Stoneking, M. and H. Soodyall.  1996.  Human evolution and the mitochondrial genome.  Current Opinion in Genetics and Development  6:731-736.
  65. Stoneking, M.  1997.  The human genome project and molecular anthropology.  Genome Research 7:87-91.
  66. Zulman-Rossi, J., M. A. Batzer, M. Stoneking, O. Delattre, and G. Thomas.  1997.  Inter-ethnic polymorphism of EWS intron 6:  genome plasticity mediated by Alu retroposition and recombination.  Human Genetics  99:357-363.
  67. Melton, T., M. Wilson, M. Batzer, and M. Stoneking.  1997.  Extent of heterogeneity in mitochondrial DNA of European populations.  Journal of Forensic Sciences 42:437-446.
  68. Stoneking, M.  1997.  Recent African origin of human mitochondrial DNA:  review of the evidence and current status of the hypothesis.  In:  Progress in Population Genetics and Human Evolution, P. Donnelly and S. Tavare (eds.), Springer-Verlag, New York, pp.1-13.
  69. Melton, T., C. Ginther, G. Sensabaugh, H. Soodyall, and M. Stoneking.  1997.  Extent of heterogeneity in mitochondrial DNA of sub-Saharan African populations.  Journal of Forensic Sciences  42:582-592.
  70. Batzer, M. A., S. T. Sherry, P. L. Deininger, and M. Stoneking.  1997.  Alu repeats and human evolution:  a critique (response).  Journal of Molecular Evolution  45:7-8.
  71. Krings, M., A. Stone, R. W. Schmitz, H. Krainitzki, M. Stoneking, and S. Pääbo.  1997.  Neandertal DNA sequences and the origin of modern humans.  Cell  90:19-30.
  72. Redd, A. J., S. L. Clifford, and M. Stoneking.  1997.  Multiplex DNA typing of short-tandem-repeat loci on the Y chromosome.  Biological Chemistry 378:923-927.
  73. Soodyall, H., T. Jenkins, A. Mukherjee, E. Du Toit, D. F. Roberts, and M. Stoneking.  1997.  The founding mitochondrial DNA lineages of Tristan da Cunha islanders.  American Journal of Physical Anthropology 104:157-166.
  74. Sherry, S. T., H. C. Harpending, M. A. Batzer, and M. Stoneking.  1997.  Alu evolution in human populations:  using the coalescent to estimate effective population size.  Genetics 147:1977-1982.
  75. Stoneking, M., J. J. Fontius, S. L. Clifford, H. Soodyall, S. Arcot, N. Saha, T. Jenkins, M. A. Tahir, P. L. Deininger, and M. A. Batzer.  1997.  Alu insertion polymorphisms and human evolution:  evidence for a larger population size in Africa.  Genome Research  7:1061-1071.
  76. Zietkiewicz, E., V. Yotova, M. Jarnik, M. Korab-Laskowska, K. K. Kidd, D. Modiano, R. Scozzari, M. Stoneking, S. Tishkoff, M. Batzer, and D. Labuda.  1997.  Nuclear DNA diversity in worldwide distributed human populations.  Gene 205:161-171.
  77. Novick, G. E., C. C. Novick, J. Yunis, E. Yunis, P. A. Mayolo, W. D. Scheer, P. L. Deininger, M. Stoneking, D. S. York, M. A. Batzer, and R. J. Herrera.  1998.  Polymorphic Alu insertions and the Asian origin of native American populations.  Human Biology  70:23-39.
  78. Jazin, E., H. Soodyall, P. Jalonen, E. Lindholm, M. Stoneking, and U. Gyllensten. 1998.  Mitochondrial mutation rate revisited:  hot spots and polymorphism. Nature Genetics  18:109-110.
  79. Stone, A. C. and M. Stoneking.  1998.  MtDNA analysis of a prehistoric Oneota population:  implications for the peopling of the New World.  American Journal of Human Genetics 62:1153-1170.
  80. Zietkiewicz, E., V. Yotova, M. Jarnik, M. Korab-Laskowska, K. K. Kidd, D. Modiano, R. Scozzari, M. Stoneking, S. Tishkoff, M. Batzer, and D. Labuda.  1998.  Genetic structure of the ancestral population of modern humans.  Journal of Molecular Evolution 47:146-155.
  81. Stoneking, M.  1998.  Women on the move.  Nature Genetics 20:219-220.
  82. Melton, T., S. Clifford, J. Martinson, M. Batzer, and M. Stoneking.  1998.  Genetic evidence for the proto-Austronesian homeland in Asia:  mitochondrial and nuclear DNA variation in Taiwanese aboriginal tribes.  American Journal of Human Genetics 63:1807-1823.
  83. Stone, A. C. and M. Stoneking.  1999.  Analysis of ancient DNA from a prehistoric Amerindian cemetery.  Philosophical Transactions of the Royal Society of London B 354:153-159.
  84. Krings, M., A. H. Salem, K. Bauer, H. Geisert, A. K. Malek, L. Chaix, C. Simon, D. Welsby, A. Di Rienzo, G. Utermann, A. Sajantila, S. Pääbo, and M. Stoneking.  1999.  MtDNA analysis of Nile River Valley populations:  a genetic corridor or barrier for migration?  American Journal of Human Genetics 64:1166-1176.
  85. Bugawan, T. L., S. J. Mack, M. Stoneking, M. Saha, H. P. Beck, and H. A. Erlich.  1999.  HLA class I allele distributions in six Pacific/Asian populations:  evidence of selection at the HLA-A locus.  Tissue Antigens 53:311-319.
  86. Redd, A. J. and M. Stoneking.  1999.  Peopling of Sahul:  mitochondrial DNA variation in Australian aboriginal and Papua New Guinean populations.  American Journal of Human Genetics 65:808-828.
  87. Nasidze, I. and M. Stoneking.  1999.  Construction of larger-size sequencing templates from degraded DNA.  BioTechniques 27:480-488.
  88. Szabo, Z., S. A. Levi-Minzi, A. M. Christiano, C. Struminger, M. Stoneking, M. A. Batzer, and C. D. Boyd.  1999.  Sequential loss of two neighboring exons of the tropoelastin gene during primate evolution.  Journal of Molecular Evolution 49:664-671.
  89. Deininger, P. L., S. T. Sherry, G. Risch, C. Donaldson, M. B. Robichaux, H. Soodyall, T. Jenkins, F. Sheen, G. Swergold, M. Stoneking and M. A. Batzer.  1999.  Interspersed repeat insertion polymorphisms for studies of human molecular anthropology.  In Genomic Diversity:  Applications in Human Population Genetics, S. S. Papiha, R. Deka and R. Chakraborty (Eds.), Plenum Press, New York, NY, pp.201-212.
  90. Begovich. A.B., W. Klitz, L.L. Steiner, S. Grams, V. Suraj-Baker, J. Hollenbach, E. Trachtenberg, L. Louie, P.A. Zimmerman, A.V.S. Hill, M. Stoneking, T. Sasazuki, O. Rickards, V.P.K. Titanji, V.I. Konenkov, M.L. Sartakova.  2000.  HLA-DQ haplotypes in 15 different populations.  In  The Major Histocompatibility Complex: Evolution, Structure and Function,  M Kasahara (Ed.), Springer, New York, NY, pp.412-426.
  91. Kayser, M., L. Roewer, M. Hedman, L. Henke, J. Henke, S. Brauer, C. Kruger, M. Krawczak, M. Nagy, T. Dobosz, R. Szibor, P. de Knijff, M. Stoneking, and A. Sajantila.  2000.  Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome revealed by direct observation in father/son pairs.  American Journal of Human Genetics 66:1580-1588.
  92. Clark, V. J., S. Sivendren, N. Saha, G. R. Bentley, R. Aunger, S. M. Sirajuddin, and M. Stoneking.  2000. The 9-bp deletion between the mitochondrial lysine tRNA and COII genes in tribal populations of India.  Human Biology 72:273-285.
  93. Kumar, S., P. W. Hedrick, T. Dowling, and M. Stoneking. 2000.  Questioning evidence for recombination in human mitochondrial DNA. Science 288:1931a.
  94. Mack, S. J., T. L. Bugawan, P. V. Moonsamy, J. A. Erlich, E. A. Trachtenberg, Y. K. Paik, A. B. Begovich, N. Saha, H. P. Beck, M. Stoneking, and H. A. Erlich.  2000.  Evolution of Pacific/Asian populations inferred from HLA class II allele frequency distributions.  Tissue Antigens 55:383-400.
  95. Kumar, S. S., I. Nasidze, S. R. Walimbe, and M. Stoneking.  2000.  Discouraging prospects for ancient DNA from India.  American Journal of Physical Anthropology 113:129-133.
  96. Di Benedetto, G., I. S. Nasidze, M. Stenico, L. Nigro, M. Krings, M. Lanzinger, L. Vigilant, M. Stoneking, S. Pääbo, and G. Barbujani.  2000.  Mitochondrial DNA sequences in prehistoric human remains from the Alps.  European Journal of Human Genetics 8:669-677.
  97. Tishkoff, S. A., A. J. Pakstis, M. Stoneking,  J. R. Kidd, G. Destro-Bisol, A. Sajantila, A. S. Deinard, G. Sirugo, T. Jenkins, K. K. Kidd, and A. G. Clark.  2000.  Short tandem-repeat polymorphism/Alu haplotype variation at the PLAT locus: implications for modern human origins.  American Journal of Human Genetics 67:901-925.
  98. Stoneking, M.  2000.  Hypervariable sites in the mtDNA control region are mutational hotspots.  American Journal of Human Genetics 67:1029-1032.
  99. Stoneking, M.  2000.  DNA and recent human evolution.  In The Origin of Humankind, M. Aloisi, B. Battaglia, E. Carafoli, and G. A. Danieli (Eds.), IOS Press, Amsterdam, The Netherlands, p.7.
  100. Kayser, M., S. Brauer, G. Weiss, P. A. Underhill, L. Roewer, W. Schiefenhövel, and M. Stoneking.  2000.  Melanesian origin of Polynesian Y chromosomes.  Current Biology 10:1237-1246 [Correction:  Current Biology 11:I-II, 2001].
  101. Sheen, F., S. T. Sherry, G. M. Risch, M. Robichaux, I. Nasidze, M. Stoneking, M. A. Batzer, and G. D. Swergold.  2000.  Reading between the LINEs:  human genomic variation induced by LINE-1 retrotransposition.  Genome Research 10:1496-1508.
  102. Comas, D., F. Calafell F, N. Benchemsi, A. Helal, G. Lefranc, M. Stoneking, M. Batzer, J. Bertranpetit, and A. Sajantila. 2000.  Alu insertion polymorphisms in Northwest Africa and the Iberian Peninsula: evidence for a strong genetic boundary through the Gibraltar Straits.  Human Genetics 107:312-319.
  103. Kayser, M., S. Brauer, G. Weiss, W. Scheifenhövel, P. A. Underhill, and M. Stoneking.  2001.  Independent histories of human Y chromosomes from Melanesia and Australia.  American Journal of Human Genetics 68:173-190.
  104. Melton, T., S. Clifford, M. Kayser, I. Nasidze, M. Batzer, and M. Stoneking.  2001.  Diversity and heterogeneity in mitochondrial DNA of North American populations.  Journal of Forensic Sciences 46:46-52.
  105. Stone, A. C.,  J. E. Starrs, and M. Stoneking.  2001.  Mitochondrial DNA analysis of the presumptive remains of Jesse James.  Journal of Forensic Sciences 46:173-176.
  106. Stoneking, M.  2001.  Single nucleotide polymorphisms:  from the evolutionary past...  Nature 409:821-822.
  107. Nasidze, I., G. M. Risch, M. Robichaux, S. T. Sherry, M. A. Batzer, and M. Stoneking.  2001.  Alu insertion polymorphisms and the genetic structure of human populations from the Caucasus.  European Journal of Human Genetics 9:267-272.
  108. Justice, C. M., Z. Den, S. V. Nguyen, M. Stoneking, P. L. Deininger, M. A. Batzer, and B. J. B. Keats.  2001.  Phylogenetic analysis of the Friedreich ataxia GAA trinucleotide repeat.  Journal of Molecular Evolution 52:232-238.
  109. Nasidze, I. and M. Stoneking.  2001.  Mitochondrial DNA variation and language replacements in the Caucasus.  Proceedings Royal Society London B 268:1197-1206.
  110. Begovich, A. B., P. V. Moonsamy, S. J. Mack, L. F. Barcellos, L. L. Steiner, S. Grams, V. Suraj-Baker, J. Hollenbach, E. Trachtenberg, L. Louie, P. Zimmerman, A. V. S. Hill, M. Stoneking, T. Sasazuki, V. I. Konenkov, M. L. Sartakova, V. P. K. Titanji, O. Rickards, and W. Klitz.  2001.  Genetic variability and linkage disequilibrium within the DP region:  analysis of 15 different populations.  Tissue Antigens 57:424-439.
  111. Tishkoff, S. A., R. Varkonyi, N. Cahinhinan, S. Abbes, G. Argyropoulos, G. Destro-Bisol, A. Drousiotou, B. Dangerfield, G. Lefranc, J. Loiselet, A. Piro, M. Stoneking, A. Tagarelli, G. Tagarelli, E. H. Touma, S. M. Williams, and A. G. Clark.  2001.  Haplotype diversity and linkage disequilibrium at human G6PD:  recent origin of alleles that confer malarial resistance.  Science 293:455-462.
  112. Oota, H., W. Settheetham-Ishida, D. Tiwawech, T. Ishida, and M. Stoneking.  2001.  Human mtDNA and Y-chromosome variation is correlated with matrilocal vs. patrilocal residence.  Nature Genetics 29:20-21.
  113. Stoneking, M., P. L. Deininger, and M. A. Batzer.  2001.  Alu insertion polymorphisms in humans:  a review.  In Genes, Fossils and Behaviour, P. Donnelly and R. Foley (eds.), IOS Press, Amsterdam, The Netherlands, pp.111-121.
  114. Kittler, R., M. Stoneking, and M. Kayser.  2002.  A whole genome amplification method to generate long fragments from low quantities of genomic DNA.  Analytical Biochemistry 300:237-244.
  115. Pakendorf, B., B. Morar, L. A. Tarskaia, M. Kayser, H. Soodyall, A. Rodewald, and M. Stoneking.  2002. Y-chromosomal evidence for a severe reduction in male population size of Yakuts.  Human Genetics 110:198-200.
  116. Kayser, M., S. Brauer, S. Willuweit, H. Schädlich, M. A. Batzer, J. Zawacki, M. Prinz, L. Roewer, and M. Stoneking.  2002.  Online Y-chromosomal short tandem repeat haplotype reference database (YHRD) for U.S. populations.  Journal of Forensic Sciences 47:513-519.
  117. Oota, H., T. Kitano, F. Jin, I. Yuasa, L. Wang, S. Ueda, N. Saitou, and M. Stoneking. 2002.  Extreme mtDNA homogeneity in continental Asian populations.  American Journal of Physical Anthropology 118:146-153.
  118. Romauldi, C., D. Balding, I. S. Nasidze, G. Risch, M. Robichaux, S. Sherry, M. Stoneking, M. A. Batzer, and G. Barbujani.  2002.   Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms.  Genome Research 12:602-612.
  119. Nasidze, I. and M. Stoneking.  2002.  Genetic variation among human populations from the Caucasus.  In: The First Workshop on Information Techologies Application to Problems of Biodiversity and Dynamics, V.K.Shumny, N.A.Kolchanov, and A.M.Fedotov (Eds.), Russian Academy of Sciences, Novosibirsk, Russia, pp.272-278.
  120. Presser, J.C., A.J. Deverell, A.J. Redd, and M. Stoneking.  2002.  Tasmanian aborigines and DNA.  Papers and Proceedings of the the Royal Society of Tasmania 136:35-38.
  121. Kayser, M., S. Brauer, G. Weiss, W. Schiefenhövel, P. Underhill, P. Shen, P. Oefner, M. Tommaseo-Ponzetta, and M. Stoneking.  2003.  Reduced Y-chromosome, but not mtDNA, diversity in human populations from West New Guinea.  American Journal of Human Genetics 72:281-302.
  122. Pakendorf, B., V. Wiebe, L. A. Tarskaia, V. A. Spitsyn, H. Soodyall, A. Rodewald, and M. Stoneking.  2003.  Mitochondrial DNA evidence for admixed origins of central Siberian populations.  American Journal of Physical Anthropology 120:211-224.
  123. Nasidze, I., T. Sarkisian, A. Kerimov, and M. Stoneking. 2003.  Testing hypotheses of language replacement in the Caucasus:  evidence from the Y-chromosome.  Human Genetics 112:255-261.
  124. Cordaux, R., N. Saha, G. R. Bentley, R. Aunger, S. M. Sirajuddin, and M. Stoneking.  2003.  Mitochondrial DNA analysis reveals diverse histories of tribal populations of India.  European Journal of Human Genetics 11:253-264.
  125. Kayser, M., S. Brauer, H. Schädlich, M. Prinz, M. A. Batzer, P. A. Zimmerman, B. A. Boatin, and M. Stoneking.  2003.  Y chromosome STR haplotypes and the genetic structure of U.S. populations of African, European, and Hispanic ancestry.  Genome Research 13:624-634.
  126. Kittler, R., A. Erler, S. Brauer, M. Stoneking, and M. Kayser.  2003.  Apparent intra-chromosomal exchange on the human Y chromosome explained by population history.  European Journal of Human Genetics 11:304-314.
  127. Kayser, M., S. Brauer and M. Stoneking.  2003.  A genome scan to detect candidate regions influenced by local natural selection in human populations.  Molecular Biology and Evolution 20:893-900.
  128. Cordaux, R. and M. Stoneking.  2003.  South Asia, the Andamanese and the genetic evidence for an “early” human dispersal out of Africa.  American  Journal of Human Genetics 72:1586-1590.
  129. Kittler, R., M. Kayser, and M. Stoneking.  2003.  Molecular evolution of Pediculus humanus and the origin of clothing.  Current Biology 13:1414-1417.
  130. Stoneking, M.  2003.  Widespread prehistoric human cannibalism:  easier to swallow?  Trends in Ecology and Evolution 18:489-490.
  131. Nasidze, I., H. Schädlich, and M. Stoneking.  2003.  Haplotypes from the Caucasus, Turkey and Iran for nine Y-STR loci.  Forensic Science International 137:85-93.
  132. Stoneking, M.  2003.  Mitochondrial genome:  evolution.  In:  Nature Encyclopedia of the Human Genome, D. Cooper (ed.), Nature Publishing Group, London, pp.1019-1023.
  133. Cordaux, R., R. Aunger, G. Bentley, I. Nasidze, S. M. Sirajuddin, and M. Stoneking. 2004.  Independent origins of Indian caste and tribal paternal lineages.  Current Biology 14:231-235.
  134. Vishwanathan, H., E. Deepa, R. Cordaux, M. Stoneking, M. V. Usha Rani, and P. P. Majumder.  2004.  Genetic structure and affinities among tribal populations of southern India:  a study of 24 autosomal DNA markers.  Annals Human Genetics 68:128-138.
  135. Kayser, M., R. Kittler, A. Erler, M. Hedman, A.C. Lee, A. Mohyuddin, S. Q. Mehdi, Z. Rosser, M. Stoneking, M. A. Jobling, A. Sajantila and C. Tyler-Smith.  2004.  A comprehensive survey of human Y-chromosomal microsatellites.  American Journal of Human Genetics 74:1183-1197.
  136. Cordaux, R., E. Deepa, H. Vishwanathan, and M. Stoneking.  2004.  Genetic evidence for the demic diffusion of agriculture to India.  Science 304:1125.
  137. Hughes, D.A., R. Cordaux, and M. Stoneking.  2004.  Quick guide:  humans.  Current Biology 14:R367-R369.
  138. Nasidze, I., E. Y.S. Ling, D. Quinque, I. Dupanloup, R. Cordaux, S. Rychkov, O. Naumova, O. Zhukova, N. Sarraf-Zadegan, G. A. Naderi, S. Asgary, S. Sardas, D. D. Farhud, T. Sarkisian, C. Asadov, A. Kerimov, and M. Stoneking.  2004.  Mitochondrial DNA and Y-chromosome variation in the Caucasus.  Annals Human Genetics 68:205-221.
  139. Cordaux, R., G. Weiss, N. Saha, and M. Stoneking.  2004.  The northeast Indian passageway: a barrier or corridor for human migrations?  Molecular Biology and Evolution 21:1525-1533.
  140. Cordaux, R., G. Bentley, R. Aunger, S. M. Sirajuddin, and M. Stoneking.  2004. Y-STR haplotypes from eight south Indian groups based on five loci.  Journal of Forensic Sciences 49:847-848.
  141. Erler, A., M. Stoneking, and M. Kayser.   2004.  Development of Y-chromosomal microsatellite markers for non-human primates.  Molecular Ecology 13:2921-2930.
  142. Kasperavičiūtė, D., V. Kučinskas, and M. Stoneking.  2004.  Y chromosome and mitochondrial DNA variation in Lithuanians.  Annals Human Genetics 68:438-452.
  143. Nasidze, I., D. Quinque, I. Dupanloup, S. Rychkov, O. Naumova, O. Zhukova, and M. Stoneking.  2004.  Genetic evidence concerning the origins of south and north Ossetians.  Annals Human Genetics 68:588-599.
  144. Oota, H., B. Pakendorf, G. Weiss, A. von Haeseler, S. Pookajorn, W. Settheetham-Ishida, D. Tiwawech, T. Ishida, and M. Stoneking.  2005.  Recent origin and cultural reversion of a hunter-gatherer group.  PLoS Biology 3:536-542.
  145. Pakendorf, B. and M. Stoneking.  2005.  Mitochondrial DNA and human evolution.  Annual Review of Genomics and Human Genetics 6:165-183.
  146. Hamilton, G., M. Stoneking, and L. Excoffier.  2005.  Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations.  Proceedings of the National Academy of Sciences USA 102:7476-7480.
  147. Nasidze, I., D. Quinque, M. Oxturk, N. Bendukidze, and M. Stoneking.  2005.  MtDNA and Y-chromosome variation in Kurdish groups.  Annals Human Genetics 69:401-412.
  148. Stoneking, M., B. Pakendorf, and H. Oota.  2005.  Authors' reply.  PLoS Biology 3:1354-1355. 
  149. Mehlotra, R.K., G. Mattera, K. Bhatia, J.C. Reeder, M. Stoneking, and P.A. Zimmerman.  2005.  Insight into the early spread of chloroquine resistant Plasmodium falciparum in Papua New Guinea.  Journal of Infectious Diseases192:2174-2179.
  150. Nasidze, I., D. Quinque, I. Dupanloup, R. Cordaux, L. Kokshunova, and M. Stoneking.  2005.  Genetic evidence for the Mongolian ancestry of Kalmyks.  American Journal of Physical Anthropology 128:846-854.
  151. Stoneking, M.  2005.  Gene, geographie und Sprache.  In:  Gene, Sprachen und ihre Evolution, G. Hauska (ed.), Unversitätsverlag Regensburg GmbH, Regensburg, Germany, pp. 133-140.
  152. Hammer, M.F., T. M. Karafet, H. Park, K. Omoto, S. Harihara, M. Stoneking and S. Horai.  2006.  Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes.  Journal of Human Genetics 51:47-58.
  153. Stoneking, M.  2006.  Genetic evidence for our recent African ancestry.  In:  The Prehistory of Africa, H. Soodyall (ed.), Jonathan Ball Publishers, Johannesburg, South Africa,  pp. 24-36.
  154. Nasidze, I., D. Quinque, M. Rahmani, S. A. Alemohamad, and M. Stoneking. 2006.  Concomitant replacement of language and mtDNA in South Caspian populations of Iran.  Current Biology 16:668-673.
  155. Stoneking, M. and I. Nasidze.  2006.  The patient is not dead yet:  premature autopsy of an mtDNA data set.  Annals Human Genetics 70:327-331.
  156. Quinque, D., R. Kittler, M. Kayser, M. Stoneking, and I. Nasidze.  2006.  Evaluation of saliva as a source of human DNA for population and association studies.  Analytical Biochemistry 353:272-277.
  157. Stoneking, M.  2006.  Investigating the health of our ancestors:  insights from the evolutionary genetic consequences of prehistoric diseases.  In:  Integrative Approaches to Human Health and Evolution, T.G. Bromage, A. Vidal, E. Aguirre and A. Perez-Ochoa (eds.), Elsevier B. V., Amsterdam,  pp.106-114.
  158. Nasidze I., and M. Stoneking M. 2006.  Mother tongue: Concomitant replacement of language and mtDNA in South Caspian populations of Iran. In: The Evolution of Language, A.Cangelosi, A.D.M. Smith and K. Smith (eds.), World Scientific Co. Pte. Ltd., New Jersey,  pp. 432-433.
  159. Mehlotra, R.K., M. Stoneking, and P.A. Zimmerman.  2006. Reply to Chan et al.  Journal of Infectious Disease 194:1024-1025.
  160. Pakendorf, B., I.N. Novgorodov, V.L. Osakovskij, A.P. Danilova, A.P. Protod’jakonov, and M. Stoneking.  2006.  Investigating the effects of prehistoric migrations in Siberia:  genetic variation and the origins of Yakuts. Human Genetics 120:334-353.
  161. Kayser, M., S. Brauer, R. Cordaux, A. Casto, O. Lao, L.A. Zhivotovsky, C. Moyse-Faurie, R.B. Rutledge, W. Schiefenhoevel, D. Gil, A.A. Lin, P.A. Underhill, P.J. Oefner, R.J. Trent, and M. Stoneking.  2006.  Melanesian and Asian origins of Polynesians: mtDNA and Y-chromosome gradients across the Pacific.  Molecular Biology and Evolution 23:2234-2244.
  162. Myles, S., M. Somel, K. Tang,  J. Kelso, and M. Stoneking.  2007.  Identifying genes underlying skin pigmentation differences among human populations.  Human Genetics 120:613-621.
  163. Rootsi, S., L.A. Zhivotovsky, M. Baldovic, M. Kayser, I.A. Kutuev, R. Khusainova, M.A. Bermisheva, M. Gubina, S. Fedorova, A.M. Ilumäe, E.K. Khusnutdinova, L.P. Osipova, M. Stoneking, V. Ferak, J. Parik, T. Kivisild, P.A. Underhill, and R. Villems. 2007.  A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe.  European Journal of Human Genetics 15:204-211.
  164. Stoneking, M. and I. Nasidze.  2007.  Reply to Parson.  Annals Human Genetics 71: 279-280.
  165. Kuch, M., D.R. Gröcke, M.C. Knyf, T.M.P. Gilbert, B. Younghusband, T. Young, I. Marshall, M. Stoneking, and H. Poinar.  2007.  A preliminary analysis of the DNA and diet of the extinct Beothuk:  a systematic approach to ancient human DNA.  American Journal of Physical Anthropology 132:594-604.
  166. DaRe, J.T., R.K. Mehlotra, P. Michon, I. Mueller, J. Reeder, Y.D. Sharma, M. Stoneking, and P.A. Zimmerman.  2007.  Microsatellite polymorphism within pfcrt provides evidence of continuing evolution of chloroquine-resistant alleles in Papua New Guinea.  Malaria Journal 6:34.
  167. Nasidze, I., D. Quinque, I. Udina, S. Kunizhevu, and M. Stoneking.  2007.  The Gagauz, a linguistic enclave, are not a genetic isolate.  Annals Human Genetics 71:379-389.
  168. Myles, S., E. Hradetzky, J. Engelken, O. Lao, P. Nürnberg, R. J. Trent, X. Wang, M. Kayser, and M. Stoneking.  2007.  Identification of a candidate genetic variant for the high prevalence of type II diabetes in Polynesians.  European Journal of Human Genetics 15:584-589.
  169. Tang, K., K.R. Thornton, and M. Stoneking.  2007.  A new approach for using genome scans to detect recent positive selection in the human genome.  PLoS Biology 5:e171.
  170. Pakendorf, B., I.N. Novgorodov, V.L. Osakovskij, and M. Stoneking.  2007. Mating patterns amongst Siberian reindeer herders:  inferences from mtDNA and Y-chromosomal analyses.  American Journal of Physical Anthropology 133:1013-1027.
  171. Cordaux, R., D. Srikanta, J. Lee, M. Stoneking, and M.A. Batzer.  2007.  In search of polymorphic Alu insertions with restricted geographic distributions.  Genomics 90:154-158.
  172. Roewer, L., C. Krüger, S. Willuweit, M. Nagy, H. Rodig, L. Kokshunova, T. Rothämel, S. Kravchenko, M.A. Jobling, M. Stoneking, I. Nasidze.  2007.  Y-chromosomal STR haplotypes in Kalmyk population samples.  Forensic Science International 173:204-209.
  173. Lalueza-Fox, C., H. Römpler, D. Carmelli, C. Stäubert, G. Catalano, D. Hughes, N. Rohland, E. Pilli, L. Longo, S. Condemi, M. de la Rasilla, J. Fortea, A. Rosas, M. Stoneking, T. Schöneberg, J. Bertranpetit, and M. Hofreiter.  2007.  A melanocortin 1 receptor allele suggests varying pigmentation among Neanderthals.  Science 318:1453-1455.
  174. Stoneking, M. and M. Kayser.  2007.  Genealogical markers:  mtDNA and the Y-chromosome.  In:  Genetic Variation:  A Laboratory Manual, M. P. Weiner, S. B. Gabriel, J.C. Stephens (eds.), Cold Spring Harbor Laboratory Press, New York, pp. 421-436.
  175. Myles, S., D. Hughes and M. Stoneking.  2007. Detecting local selection in human populations.  In:  Recent Advances in Molecular Biology and Evolution: Applications to Biological Anthropology, C. Santos and M. Lima (eds.), Research Signpost, Kerala, India, pp. 65-81.
  176. Myles, S., K. Tang, M. Somel, R.E. Green, J. Kelso, and M. Stoneking.  2008.  Identification and analysis of genomic regions with large between-population differentiation in humans.  Annals Human Genetics 72:99-110.
  177. Kayser, M., O. Lao, K. Saar, S. Brauer, X. Wang, P. Nürenberg, R.J. Trent, and M. Stoneking.  2008.  Genome-wide analysis indicates more Asian than Melanesian ancestry of Polynesians.  American Journal of Human Genetics 82:194-198.
  178. Nasidze, I., D. Quinque, M. Rahmani, S.A. Alemohamad, and M. Stoneking. 2008.  Close genetic relationship between Semitic-speaking and Indo-European-speaking groups in Iran.  Annals Human Genetics 72:241-252.
  179. Hughes, D.A., K. Tang, R. Strotmann, T. Schöneberg,  J. Prenen, B. Nilius, and M. Stoneking.  2008.  Parallel soft sweeps on TRPV6 in human populations.  PLoS ONE 3: e1686.
  180. Roewer, L., S. Willuweit, C. Krüger, M. Nagy, S. Rychkov, I. Morozowa, O. Naumova, Y. Schneider, O. Zhukova, M. Stoneking, and I. Nasidze.  2008.  Analysis of Y chromosome STR haplotypes in the European part of Russia reveals high diversities but non-significant genetic distances between populations.  International Journal of Legal Medicine 122:219-223.
  181. Stoneking, M.  2008.  Mitochondrial genome: evolution.  In:  Encyclopedia of Life Sciences, John Wiley & Sons, Ltd, Chichester, http://www.els.net/ [DOI: 10.1002/9780470015902.a0005074.pub2].
  182. Bryk, J., E. Hardouin, I. Pugach, D. Hughes, R. Strotmann, M. Stoneking, and S. Myles.  2008.  Positive selection in East Asians for an EDAR allele that enhances NF-κB activation.  PLoS ONE 3:e2209.
  183. Mehlotra, R.K., G. Mattera, M.J. Bockarie, J.D. Maguire, J.K. Baird, Y.D. Sharma, M. Alifrangis, G. Dorsey, P.J. Rosenthal, D.J. Fryauff, J.W. Kazura, M. Stoneking, and P.A. Zimmerman.  2008. Discordant patterns of genetic variation at two chloroquine-resistant loci in worldwide populations of the malaria parasite Plasmodium falciparum.  Antimicrobial Agents and Chemotherapy 52:2212-2222.
  184. Kayser, M., Y. Choi, M. van Oven, S. Mona, S. Brauer, D. Suarkia, W. Schiefenhövel, and M. Stoneking.  2008.  The impact of the Austronesian expansion:  evidence from mtDNA and Y-chromosome diversity in the Admiralty Islands of Melanesia.  Molecular Biology and Evolution 25:1362-1374.
  185. Stoneking, M.  2008.  Human origins:  the molecular perspective.  EMBO Reports 9:S46-S50.
  186. Myles S., D. Davison, J. Barrett, M. Stoneking, and N. Timpson.  2008.  Worldwide population differentiation at disease-associated SNPs.  BMC Medical Genomics 1:22.
  187. Kayser, M., O. Lao, and M. Stoneking.  2008.  Reply to Hedrick.  American Journal of Human Genetics 83:140-142.
  188. Fechner, A., D. Quinque, S. Rychkov, I. Morozowa, O. Naumova, Y. Schneider, S. Willuweit, O. Zhukova, L. Roewer, M. Stoneking, and I. Nasidze.  2008.  Boundaries and clines in the West Eurasian Y-chromosome landscape:  insights from the European part of Russia.  American Journal of Physical Anthropology 137:41-47.
  189. Balaresque, P., G.R. Bowden, E.J Parkin, G.A.Omran, E. Heyer, L. Quintana-Murci, L. Roewer, M. Stoneking, I. Nasidze, D.R. Carvalho-Silva, C. Tyler-Smith, P. de Knijff, and M.A. Jobling. 2008. Dynamic nature of the proximal AZFc region of the human Y chromosome:  multiple independent deletion and duplication events revealed by microsatellite analysis.  Human Mutation 29:1171-1180.
  190. Güldemann, T. and M. Stoneking.  2008.  A historical appraisal of clicks:  a linguistic and genetic population perspective.  Annual Review of Anthropology 37:93-109.
  191. Herráez, D.L. and M. Stoneking.  2008.  High fractions of exogenous DNA in human buccal samples reduce the quality of large-scale genotyping.  Analytical Biochemistry 383:329-331.
  192. Nasidze, I., D. Quinque, M. Rahmani, S.A. Alemohamad, P. Asadova, O. Zhukova, and M. Stoneking.  2009. MtDNA and Y-chromosome Variation in the Talysh of Iran and Azerbaijan.  American Journal of Physical Anthropology 138:82-89.
  193. Balaresque, P., E.J. Parkin, L. Roewer, D.R. Carvalho-Silva, R.J. Mitchell, R.A.H. van Oorschot, J. Henke, M. Stoneking, I. Nasidze, J. Wetton, P. de Knijff, C. Tyler-Smith, and M.A. Jobling.  2009. Genomic complexity of the Y-STR DYS19: inversions, deletions and founder lineages carrying duplications.  International Journal of Legal Medicine 123:15-23.
  194. Hughes, D.A., A. Hinney, H. Brumm, A.K. Wermter, H. Biebermann, J. Hebebrand, and M. Stoneking.  2009.  Increased constraints on MC4R during primate and human evolution.  Human Genetics 124:633-647.
  195. Hughes, D. A., M. Jastroch, M. Stoneking and M. Klingenspor. 2009. Molecular evolution of UCP1 and the evolutionary history of mammalian non-shivering thermogenesis.  BMC Evolutionary Biology 9:4.
  196. Ryan, A.W.,  D. Hughes, K. Tang, D. Kelleher, T. Ryan, R. McManus, and M. Stoneking.  2009. Natural selection and the molecular basis of electrophoretic variation at the coagulation F13B locus.  European Journal of Human Genetics 17:219-227.
  197. Nasidze, I., J. Li, D. Quinque, K. Tang, and M. Stoneking.  2009. Global diversity in the human salivary microbiome.  Genome Research 19:636-643.
  198. Hillmer, A.M., J. Freudenberg, S. Myles, S. Herms, K. Tang, D.A. Hughes, F.F. Brockschmidt, Y. Ruan, M. Stoneking, and M.M. Nöthen.  Recent positive selection of a human androgen receptor/ectodysplasin A2 receptor haplotype and its relationship to male pattern baldness.  Human Genetics (accepted).
  199. Nasidze, I., D. Quinque, J. Li, M. Li, K. Tang, and M. Stoneking.  Comparative analysis of human saliva microbiome diversity by barcoded pyrosequencing and cloning approaches.  Analytical Biochemistry (accepted).
  200. Mona, S., K.E. Grunz, S. Brauer, B. Pakendorf, L. Castri, H. Sudoyo, S. Marzuki, R.H. Barnes, J. Schmidtke, M. Stoneking, and M. Kayser.  Genetic admixture history of eastern Indonesia as revealed by Y-chromosome and mitochondrial DNA analysis.  Molecular Biology and Evolution (accepted).
     
     
   
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